pipelines.chromake.scripts.config.create_config_from_table

pipelines.chromake.scripts.config.create_config_from_table(
    table_path,
    output_path,
    proj_paths,
    jobs=None,
    sequencings=None,
)

Create a YAML config from a table. Supports SAMPLES and optional INPUT files.

Parameters

Name	Type	Description	Default
table_path	str	Path to the input CSV or Excel table.	required
output_path	str	Path to write the YAML config.	required
proj_paths	dict	Dictionary of project_name -> project_path.	required
jobs	dict	Default JOBS settings (CORES_PER_JOBS, QOS_INFOS).	None
sequencings	dict	Dictionary of sequencings informations (PATH, R1_ADAPTOR, R2_ADAPTOR).	None

Returns

Name	Type	Description
	str	Path to the written YAML config file.