pipelines.chromake.scripts.config.create_samplesheet_from_config

pipelines.chromake.scripts.config.create_samplesheet_from_config(
    config_path,
    output_path,
    strand_columns=False,
    excel=True,
)

Create a samplesheet table (CSV or Excel) from a YAML config, resolving relative paths by adding the sequencing project path. Includes both SAMPLES and INPUTS.

Parameters

Name	Type	Description	Default
config_path	str	Path to the YAML config file.	required
output_path	str	Path to save the generated table (CSV by default; Excel if excel=True).	required
strand_columns	bool	If True, each strand (R1, R2) PATH will be a separate column (wide format); if False, each strand will be in separate rows and a STRAND columns will be added to differentiate them (long format).	`False`
excel	bool	If True, save as Excel (.xlsx). Otherwise, save as CSV.	`True`

Returns

Name	Type	Description
	str	Path to the generated samplesheet file.